The script writer has responded in a long letter to Gibson which has now been made public: Joe Eszterhas Explodes at Mel Gibson: 'You Hate Jews' (Exclusive) (The Wrap).
“I’ve come to the conclusion that the reason you won’t make ‘The Maccabees’ is the ugliest possible one. You hate Jews.”Plus he is of the view that Gibson has anger management issues.
If you want to read the whole letter, the article has links to it. It is very disturbing.
Background here and links.
UPDATE: I suppose I should add that Gibson has denied the charges as "utter fabrications" and has said that the script was rejected on the basis of its "substandard" quality. See the update to the first article above for details.